Resource
| Id | Histone_ChIP-seq/ENCSR000AMO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMO [biosample_summary="Homo sapiens HepG2" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF805KGN|/files/ENCFF805KGN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4754166 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN124PYZ|/analyses/ENCAN124PYZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF686HFQ|/files/ENCFF686HFQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6641517 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMO | float |
Histone_ChIP-seq_ENCSR000AMO |
Histone_ChIP-seq ENCSR000AMO [biosample_summary="Homo sapiens HepG2" and target="H3K27ac"]
|
 |
[2.25, 139] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56741729 | 1.76% | 56377 |
| chr1 | 5419074 | 2.18% | 5441 |
| chr1_KI270713v1_random | 999 | 2.45% | 2 |
| chr2 | 4594462 | 1.90% | 4154 |
| chr3 | 3725692 | 1.88% | 3609 |
| chr4 | 2155283 | 1.13% | 2146 |
| chr5 | 2618241 | 1.44% | 2618 |
| chr6 | 3499511 | 2.05% | 3118 |
| chr7 | 2672546 | 1.68% | 2770 |
| chr8 | 2187055 | 1.51% | 2233 |
| chr9 | 2394460 | 1.73% | 2454 |
| chr10 | 2631091 | 1.97% | 2623 |
| chr11 | 2673777 | 1.98% | 2749 |
| chr12 | 2763045 | 2.07% | 2749 |
| chr13 | 1283617 | 1.12% | 1286 |
| chr14 | 1881280 | 1.76% | 1820 |
| chr15 | 1547153 | 1.52% | 1668 |
| chr16 | 2381332 | 2.64% | 2464 |
| chr17 | 3210823 | 3.86% | 3098 |
| chr17_GL000205v2_random | 536 | 0.29% | 1 |
| chr18 | 1136154 | 1.41% | 1099 |
| chr19 | 2510810 | 4.28% | 2777 |
| chr20 | 1818073 | 2.82% | 1651 |
| chr21 | 600776 | 1.29% | 607 |
| chr22 | 1368559 | 2.69% | 1422 |
| chrUn_GL000195v1 | 1413 | 0.77% | 4 |
| chrUn_GL000218v1 | 382 | 0.24% | 1 |
| chrUn_GL000219v1 | 327 | 0.18% | 1 |
| chrX | 1611487 | 1.03% | 1748 |
| chrY | 53771 | 0.09% | 64 |
| 3337 contigs with no values (128327508 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56377 | 180 | 16342 | 1006.47 | 631 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF886SZT.bed.gz | 1.37 MB | 65ec9390921220cb4bfdab5f546409de |
| ENCFF886SZT.tabix.bed.gz | 616.62 KB | 4a60fecab52d1b1c2d48217bed34cf14 |
| ENCFF886SZT.tabix.bed.gz.tbi | 175.38 KB | 5e58ca61c7ea2388880715e59fe801b6 |
| genomic_resource.yaml | 2.47 KB | 02d84f2766512fec65d0c9979e8ed009 |
| statistics/ |