Resource
| Id | Histone_ChIP-seq/ENCSR000AMK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMK [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN160DNV|/analyses/ENCAN160DNV/} has in progress subobject document {d2b5a8e1-ec0d-4d91-93fa-2154bb9bdc86|/documents/d2b5a8e1-ec0d-4d91-93fa-2154bb9bdc86/} audit_internal_action: Released analysis {ENCAN160DNV|/analyses/ENCAN160DNV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF939OQQ|/files/ENCFF939OQQ/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 9293244 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF087ZXP|/files/ENCFF087ZXP/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 13810008 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMK | float |
Histone_ChIP-seq_ENCSR000AMK |
Histone_ChIP-seq ENCSR000AMK [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me2"]
|
 |
[1.96, 47.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 86983218 | 2.70% | 91963 |
| chr1 | 8426132 | 3.38% | 8830 |
| chr2 | 6769004 | 2.79% | 7368 |
| chr3 | 5656511 | 2.85% | 5951 |
| chr4 | 4364987 | 2.29% | 4655 |
| chr5 | 4648576 | 2.56% | 5001 |
| chr6 | 5476088 | 3.21% | 5775 |
| chr7 | 4278079 | 2.68% | 4629 |
| chr8 | 3744912 | 2.58% | 4083 |
| chr9 | 3639693 | 2.63% | 3833 |
| chr10 | 4042714 | 3.02% | 4263 |
| chr11 | 4563040 | 3.38% | 4655 |
| chr12 | 4581428 | 3.44% | 4705 |
| chr13 | 2101098 | 1.84% | 2358 |
| chr14 | 2715848 | 2.54% | 2778 |
| chr15 | 2838286 | 2.78% | 3000 |
| chr16 | 2865424 | 3.17% | 2953 |
| chr17 | 4048105 | 4.86% | 4046 |
| chr18 | 1898457 | 2.36% | 2081 |
| chr19 | 3389462 | 5.78% | 3347 |
| chr20 | 2204608 | 3.42% | 2396 |
| chr21 | 950350 | 2.03% | 1020 |
| chr22 | 1644730 | 3.24% | 1668 |
| chrX | 2135686 | 1.37% | 2568 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91963 | 155 | 20356 | 945.85 | 672 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF787CWV.bed.gz | 2.27 MB | 66eb74d523b575d7a9dda89ff2550675 |
| ENCFF787CWV.tabix.bed.gz | 1005.61 KB | 69139f1ff3ae9669b1465a1ff2aed6b1 |
| ENCFF787CWV.tabix.bed.gz.tbi | 340.14 KB | 1a8bfceab7ce6e978b167c90505a484c |
| genomic_resource.yaml | 2.71 KB | 6032ed32dc5e1df71213bad4c81c4c07 |
| statistics/ |