type: position_score
table:
  filename: ENCFF787CWV.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000AMK
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000AMK [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me2"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000AMK [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me2"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female adult (50 years)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN160DNV|/analyses/ENCAN160DNV/}
    has in progress subobject document {d2b5a8e1-ec0d-4d91-93fa-2154bb9bdc86|/documents/d2b5a8e1-ec0d-4d91-93fa-2154bb9bdc86/}


    **audit\_internal\_action**: Released analysis {ENCAN160DNV|/analyses/ENCAN160DNV/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF939OQQ|/files/ENCFF939OQQ/}
    processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 9293244 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_warning**: Processed alignments file {ENCFF087ZXP|/files/ENCFF087ZXP/}
    processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 13810008 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000AMK
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (50 years)
    biosample_summary: Homo sapiens mammary epithelial cell female adult (50 years)
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002327/
    perturbed: false
    doi: 10.17989/ENCSR000AMK
    date_created: '2013-11-07T22:16:17.021846+00:00'
    date_released: '2011-02-10'
    submitter_comment: ''
    target: H3K4me2
