Histone_ChIP-seq_ENCSR000ALI
Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR000ALI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ALI [biosamplesummary="Homo sapiens keratinocyte female" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF239VSG|/files/ENCFF239VSG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3873114 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF619NZW|/files/ENCFF619NZW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4754489 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN032OJN|/analyses/ENCAN032OJN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF784QIY|/files/ENCFF784QIY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9517301 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALI | float |
Histone_ChIP-seq_ENCSR000ALI |
Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"]
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[2.03, 23.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF575PPG.bed.gz | 2.12 MB | 20dd98284373f4569b98440a2fcb6c69 |
| ENCFF575PPG.bed.gz.dvc | 101.0 B | b8d4c4e59e85630f469b2812de404846 |
| ENCFF575PPG.tabix.bed.gz | 1.11 MB | 127ba8611b0b2c6afd22a327419082df |
| ENCFF575PPG.tabix.bed.gz.dvc | 107.0 B | 205ed2ba1fa6277cc64eace0c80c9ebe |
| ENCFF575PPG.tabix.bed.gz.tbi | 331.24 KB | 70b922bbe4e1500b31071936cfb51f71 |
| ENCFF575PPG.tabix.bed.gz.tbi.dvc | 110.0 B | 1033a112d10298c036f70a7ec3c1c61a |
| genomic_resource.yaml | 2.84 KB | 31fe2f8f1260cf8faab822abb91a1ac1 |
| genomic_resource_original.yaml | 2.72 KB | 71974002ce413b6ad282d9ab6dc970e0 |
| statistics/ |