type: position_score
table:
  filename: ENCFF575PPG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000ALI
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 3


    **summary**: female


    **output\_type**: replicated peaks


    **audit\_error**: Processed alignments file {ENCFF239VSG|/files/ENCFF239VSG/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3873114 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_error**: Processed alignments file {ENCFF619NZW|/files/ENCFF619NZW/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4754489 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_internal\_action**: Archived analysis {ENCAN032OJN|/analyses/ENCAN032OJN/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF784QIY|/files/ENCFF784QIY/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9517301 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000ALI
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female
    biosample_summary: Homo sapiens keratinocyte female
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000312/
    perturbed: false
    doi: 10.17989/ENCSR000ALI
    date_created: '2013-11-07T22:16:03.145625+00:00'
    date_released: '2011-02-10'
    submitter_comment: ''
    target: H3K4me1
