Resource
| Id | Histone_ChIP-seq/ENCSR000AKE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKE [biosample_summary="Homo sapiens GM12878" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN833AYF|/analyses/ENCAN833AYF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF926HQH|/files/ENCFF926HQH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9476652 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF297QVO|/files/ENCFF297QVO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7962756 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKE | float |
Histone_ChIP-seq_ENCSR000AKE |
Histone_ChIP-seq ENCSR000AKE [biosample_summary="Homo sapiens GM12878" and target="H3K36me3"]
|
 |
[1.93, 10.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45926952 | 1.43% | 110150 |
| chr1 | 4500506 | 1.81% | 10728 |
| chr2 | 3745490 | 1.55% | 9014 |
| chr3 | 3025827 | 1.53% | 7369 |
| chr4 | 1827883 | 0.96% | 4521 |
| chr5 | 2530389 | 1.39% | 6134 |
| chr6 | 2210469 | 1.29% | 5388 |
| chr7 | 2027092 | 1.27% | 4986 |
| chr8 | 1605779 | 1.11% | 3925 |
| chr9 | 2071368 | 1.50% | 4929 |
| chr9_KI270718v1_random | 434 | 1.14% | 1 |
| chr10 | 2117999 | 1.58% | 5089 |
| chr11 | 2315187 | 1.71% | 5407 |
| chr12 | 2699254 | 2.03% | 6348 |
| chr13 | 1023812 | 0.90% | 2542 |
| chr14 | 1696390 | 1.58% | 4078 |
| chr15 | 1845316 | 1.81% | 4455 |
| chr16 | 1969558 | 2.18% | 4522 |
| chr17 | 2564877 | 3.08% | 5975 |
| chr18 | 826314 | 1.03% | 2065 |
| chr19 | 1928553 | 3.29% | 4481 |
| chr20 | 1403653 | 2.18% | 3316 |
| chr21 | 508698 | 1.09% | 1196 |
| chr22 | 1079233 | 2.12% | 2577 |
| chrX | 402871 | 0.26% | 1104 |
| 3342 contigs with no values (186266446 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110150 | 185 | 3869 | 416.95 | 342 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF674TVF.bed.gz | 1.84 MB | f4a6f044532459ce481964fa20ab0270 |
| ENCFF674TVF.tabix.bed.gz | 1019.83 KB | 34bce4a5670841b136ff177509afb9e9 |
| ENCFF674TVF.tabix.bed.gz.tbi | 167.87 KB | b9960f8bedf0d09079b3af6083219e7e |
| genomic_resource.yaml | 2.52 KB | d864a740c414fca833074e199c804f24 |
| statistics/ |