| Id: | DNase-seq/ENCSR635QIZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR635QIZ [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Alignment file {ENCFF188NQV|/files/ENCFF188NQV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 44416100 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR635QIZ | float |
DNase-seq_ENCSR635QIZ |
DNase-seq ENCSR635QIZ [biosample_summary="Homo sapiens activated T-helper 1 cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
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[0.181, 55] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF553LLN.bed.gz | 432.48 KB | 842edbb7d602889424577bfc47a84d1a |
| ENCFF553LLN.bed.gz.dvc | 100.0 B | f7b3b073e6d61f200924ef0596f3bbe2 |
| ENCFF553LLN.tabix.bed.gz | 392.25 KB | 70b724cc1c47543589928ad2306a7402 |
| ENCFF553LLN.tabix.bed.gz.dvc | 106.0 B | 70f3010af1921f96cac7e7fc28a4c513 |
| ENCFF553LLN.tabix.bed.gz.tbi | 194.91 KB | bc7a71448236d1918dfd6d27585f56d8 |
| ENCFF553LLN.tabix.bed.gz.tbi.dvc | 110.0 B | ead21ae6663a3871902803a466f60307 |
| genomic_resource.yaml | 2.28 KB | 35f4bb8c9eebeb45bf4cc6666183d121 |
| genomic_resource_original.yaml | 2.12 KB | 29fb549953ca99fb5461d9b69e23fee6 |
| statistics/ |