type: position_score
table:
  filename: ENCFF553LLN.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR635QIZ
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR635QIZ [TISSUE: Homo sapiens activated T-helper 1 cell
    female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (33 years) treated with 50 U/mL Interleukin-2 for 16
    hours


    **output\_type**: peaks


    **audit\_warning**: Alignment file {ENCFF188NQV|/files/ENCFF188NQV/} processed
    by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/}
    ) for GRCh38 assembly has 44416100 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR635QIZ
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female adult (33 years) treated with 50 U/mL Interleukin-2
      for 16 hours
    biosample_summary: Homo sapiens activated T-helper 1 cell female adult (33 years)
      treated with 50 U/mL Interleukin-2 for 16 hours
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_NTR_0000633/
    perturbed: false
    doi: 10.17989/ENCSR635QIZ
    date_created: '2020-04-16T03:32:07.801071+00:00'
    date_released: '2020-09-28'
    submitter_comment: The biosample ontology on this experiment was previously CL:0000545
      (T-helper 1 cell). It has been updated to NTR:0000633 (activated T-helper 1
      cell) on 11/04/21.
