Resource

Id DNase-seq/ENCSR536VAYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR536VAY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
Description
Labels
  • accession: ENCSR536VAY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • date_created: 2020-04-20T23:45:28.483942+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR536VAY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR536VAY float

DNase-seq_ENCSR536VAY
DNase-seq ENCSR536VAY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR536VAY [0.772, 45.8]
n
4,866,474
mean
8.42
sd
6.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 48664740.15% 27417
chr1 496324 0.20% 2795
chr2 339244 0.14% 1921
chr3 275812 0.14% 1554
chr4 168788 0.09% 943
chr5 216348 0.12% 1237
chr6 270848 0.16% 1550
chr7 226565 0.14% 1262
chr8 179268 0.12% 1027
chr9 202063 0.15% 1152
chr10 205401 0.15% 1206
chr11 251758 0.19% 1417
chr12 250966 0.19% 1401
chr13 101103 0.09% 571
chr14 167450 0.16% 938
chr15 163067 0.16% 933
chr16 211286 0.23% 1162
chr17 285656 0.34% 1606
chr18 70115 0.09% 393
chr19 358959 0.61% 1940
chr20 131970 0.20% 769
chr21 53034 0.11% 303
chr22 117381 0.23% 670
chrX 119075 0.08% 645
chrY 3993 0.01% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27417 10 640 177.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF823GUD.bed.gz 295.33 KB e2d02f0476f5ff98f3917529b847b52b
ENCFF823GUD.tabix.bed.gz 263.05 KB 0566a452bb6c8be15a6184977570db06
ENCFF823GUD.tabix.bed.gz.tbi 163.55 KB df24c69b927eeff5960ebdb33d45c976
genomic_resource.yaml 3.22 KB dc15ff2f44677d9e8bcc63b622f4236f
statistics/