| Id: | DNase-seq/ENCSR536VAY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR536VAY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours output_type: peaks audit_error: Alignment file {ENCFF581VZB|/files/ENCFF581VZB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 12988014 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN118BBG|/analyses/ENCAN118BBG/} has in progress subobject document {1a06e1b2-e3d5-4355-8ab7-4a1fda29073a|/documents/1a06e1b2-e3d5-4355-8ab7-4a1fda29073a/} audit_internal_action: Released analysis {ENCAN118BBG|/analyses/ENCAN118BBG/} has in progress subobject document {835c42cc-f47e-4c47-af96-6d56313fd9e5|/documents/835c42cc-f47e-4c47-af96-6d56313fd9e5/} |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR536VAY | float |
DNase-seq_ENCSR536VAY |
DNase-seq ENCSR536VAY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
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[0.772, 45.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF823GUD.bed.gz | 295.33 KB | e2d02f0476f5ff98f3917529b847b52b |
| ENCFF823GUD.bed.gz.dvc | 100.0 B | 93a2e4076486822503d49324fa3f703c |
| ENCFF823GUD.tabix.bed.gz | 263.05 KB | 0566a452bb6c8be15a6184977570db06 |
| ENCFF823GUD.tabix.bed.gz.dvc | 106.0 B | b3ce861f21e9b12b9babd666120d8a0c |
| ENCFF823GUD.tabix.bed.gz.tbi | 163.55 KB | df24c69b927eeff5960ebdb33d45c976 |
| ENCFF823GUD.tabix.bed.gz.tbi.dvc | 110.0 B | 9d9fc7134ce1e7c920b1575632b50e6f |
| genomic_resource.yaml | 3.22 KB | dc15ff2f44677d9e8bcc63b622f4236f |
| genomic_resource_original.yaml | 2.93 KB | bfc430df652ef09296d6e864724fbe24 |
| statistics/ |