DNase-seq_ENCSR261RWJ
DNase-seq ENCSR261RWJ [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR261RWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR261RWJ [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN921VLI|/analyses/ENCAN921VLI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF732ROP|/files/ENCFF732ROP/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL202DNS|/pipelines/ENCPL202DNS/} ) for GRCh38 assembly has 39488148 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF732ROP|/files/ENCFF732ROP/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR261RWJ | float |
DNase-seq_ENCSR261RWJ |
DNase-seq ENCSR261RWJ [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)"]
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[6, 4.22e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF977PNH.bed.gz | 423.75 KB | 6051e15d7434c1bcfbcae347fcb71688 |
| ENCFF977PNH.bed.gz.dvc | 100.0 B | 6939088761b3bceb1669434bfef2ff18 |
| ENCFF977PNH.tabix.bed.gz | 362.21 KB | e4749cbf4f83b64f6c971c146a4359a1 |
| ENCFF977PNH.tabix.bed.gz.dvc | 106.0 B | 39d0b8c9836cccd256b6eb9dc2f298ee |
| ENCFF977PNH.tabix.bed.gz.tbi | 213.79 KB | f00d93255c8904b4560b7edada11318a |
| ENCFF977PNH.tabix.bed.gz.tbi.dvc | 110.0 B | 55dd00b395578aea8cf84b515d790abc |
| genomic_resource.yaml | 2.81 KB | b78e77cf929853e6a2a96a6864fa80b3 |
| genomic_resource_original.yaml | 2.7 KB | 579faa9aa7ced85a4ad4254dc178f3d3 |
| statistics/ |