DNase-seq_ENCSR224IYD
DNase-seq ENCSR224IYD [biosample_summary="Homo sapiens medulla oblongata tissue male adult (78 years) and male adult (84 years)"]
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| Id: | DNase-seq/ENCSR224IYD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR224IYD [biosample_summary="Homo sapiens medulla oblongata tissue male adult (78 years) and male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (84 years) male adult (78 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF182IAY|/files/ENCFF182IAY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF188LQX|/files/ENCFF188LQX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.21. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN284HPJ|/analyses/ENCAN284HPJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR224IYD | float |
DNase-seq_ENCSR224IYD |
DNase-seq ENCSR224IYD [biosample_summary="Homo sapiens medulla oblongata tissue male adult (78 years) and male adult (84 years)"]
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[5, 7.79e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF356BZZ.bed.gz | 2.39 MB | cccca8600b119ca84a6cb18bfda9ec83 |
| ENCFF356BZZ.bed.gz.dvc | 101.0 B | 4f15d4d68b1fb6a0d20e9d672c15862f |
| ENCFF356BZZ.tabix.bed.gz | 2.06 MB | ed5064a9bdcaa28af47f62742d5fa79b |
| ENCFF356BZZ.tabix.bed.gz.dvc | 107.0 B | 5d6fd097288f71d62cbea9c0b78fe2da |
| ENCFF356BZZ.tabix.bed.gz.tbi | 680.31 KB | 53e73ff8752f56cd9bd57693bfa61d70 |
| ENCFF356BZZ.tabix.bed.gz.tbi.dvc | 110.0 B | ccdc1fa55a48411520fefd7d5f8e9423 |
| genomic_resource.yaml | 3.13 KB | 7fd76c2029891c228bb60be0c7391055 |
| genomic_resource_original.yaml | 3.0 KB | ceaba3cccbfdac3657be7748f56f70ff |
| statistics/ |