type: position_score
table:
  filename: ENCFF356BZZ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR224IYD
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR224IYD [biosample_summary="Homo sapiens medulla oblongata tissue male adult (78 years) and male adult (84 years)"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR224IYD [biosample_summary="Homo sapiens medulla oblongata tissue male adult (78 years) and male adult (84 years)"]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: male adult (84 years) male adult (78 years)


    **output\_type**: peaks


    **audit\_error**: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous
    to the commonly used fraction of reads in peaks metric. ENCODE processed alignment
    files {ENCFF182IAY|/files/ENCFF182IAY/} processed by DNase-seq ENCODE3 GRCh38
    pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly  have a SPOT1
    score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is
    considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})


    **audit\_error**: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous
    to the commonly used fraction of reads in peaks metric. ENCODE processed alignment
    files {ENCFF188LQX|/files/ENCFF188LQX/} processed by DNase-seq ENCODE3 GRCh38
    pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly  have a SPOT1
    score of 0.21. According to ENCODE standards, SPOT1 score of 0.4 or higher is
    considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})


    **audit\_internal\_action**: Archived analysis {ENCAN284HPJ|/analyses/ENCAN284HPJ/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR224IYD
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: male adult (78 years) male adult (84 years)
    biosample_summary: Homo sapiens medulla oblongata tissue male adult (78 years)
      and male adult (84 years)
    replication_type: anisogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0001896/
    perturbed: false
    doi: 10.17989/ENCSR224IYD
    date_created: '2015-03-27T18:34:30.215918+00:00'
    date_released: '2015-08-31'
    submitter_comment: ''
