| Id: | DNase-seq/ENCSR223XND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR223XND [biosample_summary="Homo sapiens T-helper 2 cell male adult\ \ (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours,\ \ 100 ng/mL Interleukin-4 for 36 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, 100 ng/mL Interleukin-4 for 36 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF966RTN|/files/ENCFF966RTN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR223XND | float |
DNase-seq_ENCSR223XND |
DNase-seq ENCSR223XND [biosample_summary="Homo sapiens T-helper 2 cell male adult\ \ (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours,\ \ 100 ng/mL Interleukin-4 for 36 hours"]
|
 |
[0.0553, 23.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF534UAS.bed.gz | 772.03 KB | 81ceab490f9e1fb3917e9dcf998d5e29 |
| ENCFF534UAS.bed.gz.dvc | 100.0 B | f2a823a93e5cc2f714c68060ae82a0a0 |
| ENCFF534UAS.tabix.bed.gz | 707.19 KB | 955e1628702020c7a4995ced34b44257 |
| ENCFF534UAS.tabix.bed.gz.dvc | 106.0 B | 9ec3f2bd5c8138c80411467c32a8dba6 |
| ENCFF534UAS.tabix.bed.gz.tbi | 290.3 KB | 07324f798928c7745e873ea9fde3b721 |
| ENCFF534UAS.tabix.bed.gz.tbi.dvc | 110.0 B | 4547965aa9c628ffc3f03e29c2b7ab45 |
| genomic_resource.yaml | 2.6 KB | 00b08d7b2a6a19f0c2885c12df09cbd7 |
| genomic_resource_original.yaml | 2.4 KB | 4605784ec5cff4a37b9cb6b0b15d84ae |
| statistics/ |