type: position_score
table:
  filename: ENCFF534UAS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR223XND
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR223XND [biosample_summary="Homo sapiens T-helper 2 cell male adult\ \ (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours,\ \ 100 ng/mL Interleukin-4 for 36 hours"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR223XND [biosample_summary="Homo sapiens T-helper 2 cell male adult\ \ (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours,\ \ 100 ng/mL Interleukin-4 for 36 hours"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\
    \ 36 hours, 100 ng/mL Interleukin-4 for 36 hours\n\n**output\\_type**: peaks\n\
    \n**audit\\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,\
    \ analogous to the commonly used fraction of reads in peaks metric. ENCODE processed\
    \ alignment files {ENCFF966RTN|/files/ENCFF966RTN/} processed by DNase-seq ENCODE4\
    \ v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly\
    \  have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4\
    \ or higher is considered a product of high quality data. Any sample with a SPOT1\
    \ score <0.3 should be targeted for replacement with a higher quality sample,\
    \ and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of\
    \ 0.25 is considered minimally acceptable for rare and hard to find primary tissues.\
    \ (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR223XND
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: "male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma\
      \ antibody for 36 hours, 100 ng/mL Interleukin-4 for 36 hours"
    biosample_summary: "Homo sapiens T-helper 2 cell male adult (35 years) treated\
      \ with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours, 100 ng/mL Interleukin-4\
      \ for 36 hours"
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_CL_0000546/
    perturbed: false
    doi: 10.17989/ENCSR223XND
    date_created: '2021-09-29T23:48:43.220175+00:00'
    date_released: '2021-11-04'
    submitter_comment: ''
