Resource
| Id | DNase-seq/ENCSR122VUW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"] |
| Description |
status: released biological_replicates: Rep 2 summary: female adult (27 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN571QVM|/analyses/ENCAN571QVM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF517CBA|/files/ENCFF517CBA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31579004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF298UJF|/files/ENCFF298UJF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26269558 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF055YDU|/files/ENCFF055YDU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35251136 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF365ZEE|/files/ENCFF365ZEE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35056002 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR122VUW | float |
DNase-seq_ENCSR122VUW |
DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"]
|
 |
[2, 1.79e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16750680 | 0.52% | 111517 |
| chr1 | 1574091 | 0.63% | 10480 |
| chr2 | 1301072 | 0.54% | 8664 |
| chr3 | 1092300 | 0.55% | 7273 |
| chr4 | 804597 | 0.42% | 5351 |
| chr5 | 872911 | 0.48% | 5813 |
| chr6 | 1013250 | 0.59% | 6749 |
| chr7 | 866066 | 0.54% | 5767 |
| chr8 | 750724 | 0.52% | 4994 |
| chr9 | 690709 | 0.50% | 4597 |
| chr10 | 802950 | 0.60% | 5342 |
| chr11 | 806693 | 0.60% | 5375 |
| chr12 | 844336 | 0.63% | 5622 |
| chr13 | 444180 | 0.39% | 2953 |
| chr14 | 546855 | 0.51% | 3638 |
| chr15 | 536550 | 0.53% | 3573 |
| chr16 | 539527 | 0.60% | 3589 |
| chr17 | 741456 | 0.89% | 4943 |
| chr18 | 364624 | 0.45% | 2424 |
| chr19 | 656645 | 1.12% | 4375 |
| chr20 | 438300 | 0.68% | 2919 |
| chr21 | 203850 | 0.44% | 1357 |
| chr22 | 320944 | 0.63% | 2137 |
| chrX | 535800 | 0.34% | 3567 |
| chrY | 2250 | <0.01% | 15 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111517 | 57 | 300 | 150.21 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF066XNH.bed.gz | 1.06 MB | 400f6fad34c320175b8cda18e21622bb |
| ENCFF066XNH.tabix.bed.gz | 939.42 KB | 3caebf4885c41d0c937d763c3315c461 |
| ENCFF066XNH.tabix.bed.gz.tbi | 483.85 KB | ac25953c90a4c2530448cd0b4544177f |
| genomic_resource.yaml | 4.0 KB | 057cd2f5e67cfb4e570a1ab822b15471 |
| statistics/ |