DNase-seq_ENCSR122VUW
DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"]
×
| Id: | DNase-seq/ENCSR122VUW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female adult (27 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN571QVM|/analyses/ENCAN571QVM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF517CBA|/files/ENCFF517CBA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31579004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF298UJF|/files/ENCFF298UJF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26269558 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF055YDU|/files/ENCFF055YDU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35251136 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF365ZEE|/files/ENCFF365ZEE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35056002 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR122VUW | float |
DNase-seq_ENCSR122VUW |
DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"]
|
|
[2, 1.79e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF066XNH.bed.gz | 1.06 MB | 400f6fad34c320175b8cda18e21622bb |
| ENCFF066XNH.bed.gz.dvc | 101.0 B | 747880d342d0b68c9606bdaa3644ac82 |
| ENCFF066XNH.tabix.bed.gz | 939.42 KB | 3caebf4885c41d0c937d763c3315c461 |
| ENCFF066XNH.tabix.bed.gz.dvc | 106.0 B | a8281c07ad0e180f68b2cac83bdc74e2 |
| ENCFF066XNH.tabix.bed.gz.tbi | 483.85 KB | ac25953c90a4c2530448cd0b4544177f |
| ENCFF066XNH.tabix.bed.gz.tbi.dvc | 110.0 B | f532efd76284cca3799c412c95804ee1 |
| genomic_resource.yaml | 4.0 KB | 057cd2f5e67cfb4e570a1ab822b15471 |
| genomic_resource_original.yaml | 3.88 KB | 2c2a3054c0b20f1b802248a83e927be6 |
| statistics/ |