type: position_score
table:
  filename: ENCFF066XNH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR122VUW
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR122VUW [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years)"]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: female adult (27 years)


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN571QVM|/analyses/ENCAN571QVM/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_warning**: Alignment file {ENCFF517CBA|/files/ENCFF517CBA/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 31579004 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})


    **audit\_warning**: Alignment file {ENCFF298UJF|/files/ENCFF298UJF/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 26269558 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})


    **audit\_warning**: Alignment file {ENCFF055YDU|/files/ENCFF055YDU/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 35251136 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})


    **audit\_warning**: Alignment file {ENCFF365ZEE|/files/ENCFF365ZEE/} processed
    by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} )
    for GRCh38 assembly has 35056002 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR122VUW
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female adult (27 years)
    biosample_summary: Homo sapiens common myeloid progenitor, CD34-positive female
      adult (27 years)
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0001059/
    perturbed: false
    doi: 10.17989/ENCSR122VUW
    date_created: '2015-09-16T21:42:09.236495+00:00'
    date_released: '2013-07-31'
    submitter_comment: The replicate structure of this experiment was updated in November
      of 2017 as previously-independent experiments were merged into one.
