| Id: | DNase-seq/ENCSR098PTC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (25 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN822CJB|/analyses/ENCAN822CJB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_not_compliant: Replicate concordance in DNase-seq experiments is measured by calculating the Pearson correlation between signal quantification of the replicates. ENCODE processed signal files {ENCFF996GHG|/files/ENCFF996GHG/}, {ENCFF438PGV|/files/ENCFF438PGV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a Pearson correlation of 0.80. According to ENCODE standards, in an isogenic assay a Pearson correlation value > 0.9 is recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/} ) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR098PTC | float |
DNase-seq_ENCSR098PTC |
DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
|
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[6, 1.53e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF273EMN.bed.gz | 2.16 MB | 9716f32802d780524e56b6590a6350d6 |
| ENCFF273EMN.bed.gz.dvc | 101.0 B | 07211d1ffd54fab240d0bfc77e099232 |
| ENCFF273EMN.tabix.bed.gz | 1.87 MB | ae91d1bbbf1b161f2e1f04bb274929ec |
| ENCFF273EMN.tabix.bed.gz.dvc | 107.0 B | d9a19413b94aab103052ade7a6532e64 |
| ENCFF273EMN.tabix.bed.gz.tbi | 669.63 KB | def8262161c92eba672ffe519e18d772 |
| ENCFF273EMN.tabix.bed.gz.tbi.dvc | 110.0 B | 6c1ba0e8af18aa90ae4ea518613da67c |
| genomic_resource.yaml | 2.01 KB | d5e3d26f1f3a32bf426d1c2b828eef53 |
| genomic_resource_original.yaml | 1.91 KB | 20e987ba961887eb0623f6d539e37d6b |
| statistics/ |