Resource

Id DNase-seq/ENCSR098PTCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
Description
Labels
  • accession: ENCSR098PTC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell
  • date_created: 2015-03-30T18:44:15.937036+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR098PTC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR098PTC float

DNase-seq_ENCSR098PTC
DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
 HISTOGRAM FOR DNase-seq_ENCSR098PTC [6, 1.53e+04]
n
33,733,582
mean
354
sd
702

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 337335821.05% 224638
chr1 3109630 1.25% 20701
chr2 2716961 1.12% 18099
chr3 2230458 1.12% 14855
chr4 1720283 0.90% 11446
chr5 1789473 0.99% 11919
chr6 2022396 1.18% 13466
chr7 1787271 1.12% 11905
chr8 1521250 1.05% 10129
chr9 1366737 0.99% 9108
chr10 1605729 1.20% 10688
chr11 1601801 1.19% 10662
chr12 1632259 1.22% 10871
chr13 950445 0.83% 6333
chr14 1085665 1.01% 7227
chr15 1083676 1.06% 7213
chr16 1035444 1.15% 6893
chr17 1443298 1.73% 9614
chr18 742374 0.92% 4940
chr19 1206072 2.06% 8039
chr20 865967 1.34% 5767
chr21 417537 0.89% 2781
chr22 631025 1.24% 4205
chrX 1092478 0.70% 7274
chrY 75353 0.13% 503
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 224638 6 450 150.17 150
global segment-length histogram

Files

Filename Size md5
ENCFF273EMN.bed.gz 2.16 MB 9716f32802d780524e56b6590a6350d6
ENCFF273EMN.tabix.bed.gz 1.87 MB ae91d1bbbf1b161f2e1f04bb274929ec
ENCFF273EMN.tabix.bed.gz.tbi 669.63 KB def8262161c92eba672ffe519e18d772
genomic_resource.yaml 2.01 KB d5e3d26f1f3a32bf426d1c2b828eef53
statistics/