type: position_score
table:
  filename: ENCFF273EMN.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR098PTC
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR098PTC [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male adult (25 years)


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN822CJB|/analyses/ENCAN822CJB/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_not\_compliant**: Replicate concordance in DNase-seq experiments is measured
    by calculating the Pearson correlation between signal quantification of the replicates.
    ENCODE processed signal files {ENCFF996GHG|/files/ENCFF996GHG/}, {ENCFF438PGV|/files/ENCFF438PGV/}
    processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/})
    for GRCh38 assembly  have a Pearson correlation of 0.80. According to ENCODE standards,
    in an isogenic assay a Pearson correlation value > 0.9 is recommended. (See {ENCODE
    DNase-seq data standards|/data-standards/dnase-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR098PTC
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: male adult (25 years)
    biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
    perturbed: false
    doi: 10.17989/ENCSR098PTC
    date_created: '2015-03-30T18:44:15.937036+00:00'
    date_released: '2015-08-31'
    submitter_comment: ''
