DNase-seq_ENCSR000EQN
DNase-seq ENCSR000EQN [biosample_summary="Homo sapiens WI38 stably expressing RAF1"]
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| Id: | DNase-seq/ENCSR000EQN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EQN [biosample_summary="Homo sapiens WI38 stably expressing RAF1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: stably expressing RAF1 output_type: peaks audit_warning: Alignment file {ENCFF910RBA|/files/ENCFF910RBA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 20044972 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF759BTN|/files/ENCFF759BTN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21109076 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EQN | float |
DNase-seq_ENCSR000EQN |
DNase-seq ENCSR000EQN [biosample_summary="Homo sapiens WI38 stably expressing RAF1"]
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[0.238, 37.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF161FTX.bed.gz | 650.52 KB | 31bf7c2306723af2886e093eb386514c |
| ENCFF161FTX.bed.gz.dvc | 100.0 B | f49937989094dac1778019028c74e8bf |
| ENCFF161FTX.tabix.bed.gz | 580.51 KB | db3884bdf2e64358cdbc2a8b4cf5c7b4 |
| ENCFF161FTX.tabix.bed.gz.dvc | 106.0 B | 0b0b554f4c5bef13b0808d5dd6163398 |
| ENCFF161FTX.tabix.bed.gz.tbi | 330.23 KB | 663a0773346a2b54184e86492e0829c4 |
| ENCFF161FTX.tabix.bed.gz.tbi.dvc | 110.0 B | e5d192ef994aa9d026ba760ffca48212 |
| genomic_resource.yaml | 2.41 KB | bdccdf26dbbe1e4c7637db47d3c44328 |
| genomic_resource_original.yaml | 2.32 KB | d04c42ca7ee565a7130e76897f9f6424 |
| statistics/ |