type: position_score
table:
  filename: ENCFF161FTX.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EQN
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EQN [TISSUE: Homo sapiens WI38 stably expressing RAF1]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: stably expressing RAF1


    **output\_type**: peaks


    **audit\_warning**: Alignment file {ENCFF910RBA|/files/ENCFF910RBA/} processed
    by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/}
    ) for GRCh38 assembly has 20044972 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/})


    **audit\_warning**: Alignment file {ENCFF759BTN|/files/ENCFF759BTN/} processed
    by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/}
    ) for GRCh38 assembly has 21109076 mapped reads. According to ENCODE standards,
    conventional DNase-seq profile requires a minimum of 20 million uniquely mapped
    reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended
    value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million
    uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EQN
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: stably expressing RAF1
    biosample_summary: Homo sapiens WI38 stably expressing RAF1
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001260/
    perturbed: false
    doi: 10.17989/ENCSR000EQN
    date_created: '2013-09-15T21:49:44.382336-08:00'
    date_released: '2011-05-04'
    submitter_comment: ''
