Resource

Id DNase-seq/ENCSR000EQCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQC [biosample_summary="Homo sapiens T-helper 1 cell"]
Description
Labels
  • accession: ENCSR000EQC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell
  • date_created: 2013-12-12T07:10:01.246367+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000EQC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQC float

DNase-seq_ENCSR000EQC

DNase-seq ENCSR000EQC [biosample_summary="Homo sapiens T-helper 1 cell"]
HISTOGRAM FOR DNase-seq_ENCSR000EQC [3, 2.62e+04]
n
19,476,765
mean
667
sd
1.53e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194767650.61% 129722
chr1 1847378 0.74% 12302
chr2 1571931 0.65% 10469
chr3 1228577 0.62% 8182
chr4 876283 0.46% 5831
chr5 1014637 0.56% 6755
chr6 1185836 0.69% 7900
chr7 941065 0.59% 6266
chr8 832755 0.57% 5546
chr9 792345 0.57% 5280
chr10 892499 0.67% 5945
chr11 908045 0.67% 6049
chr12 982925 0.74% 6549
chr13 490966 0.43% 3271
chr14 696135 0.65% 4637
chr15 649200 0.64% 4323
chr16 663607 0.73% 4422
chr17 926156 1.11% 6171
chr18 373704 0.46% 2489
chr19 777258 1.33% 5178
chr20 499950 0.78% 3330
chr21 246711 0.53% 1644
chr22 377258 0.74% 2515
chrX 683844 0.44% 4551
chrY 17700 0.03% 117
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129722 8 429 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF920ELS.bed.gz 1.27 MB d79937a88e830880f8075dc497eb085c
ENCFF920ELS.tabix.bed.gz 1.1 MB 1f946e01432d289cd60328adee1e676f
ENCFF920ELS.tabix.bed.gz.tbi 465.52 KB 49af1c946ba5fa47d7dbad97e0bc6860
genomic_resource.yaml 1.91 KB e6c1d32640425aa0dc26efbcf3e48b7b
statistics/