type: position_score
table:
  filename: ENCFF920ELS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EQC
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR000EQC [biosample_summary="Homo sapiens T-helper 1 cell"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EQC [biosample_summary="Homo sapiens T-helper 1 cell"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 2\n\n**summary**:\
    \ \n\n**output\\_type**: peaks\n\n**audit\\_internal\\_action**: Archived analysis\
    \ {ENCAN305CDI|/analyses/ENCAN305CDI/} has in progress subobject quality standard\
    \ {encode3-dnase|/quality-standards/encode3-dnase/}\n\n**audit\\_not\\_compliant**:\
    \ Replicate concordance in DNase-seq experiments is measured by calculating the\
    \ Pearson correlation between signal quantification of the replicates. ENCODE\
    \ processed signal files {ENCFF479VHW|/files/ENCFF479VHW/}, {ENCFF148BTW|/files/ENCFF148BTW/}\
    \ processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/})\
    \ for GRCh38 assembly  have a Pearson correlation of 0.53. According to ENCODE\
    \ standards, in an isogenic assay a Pearson correlation value > 0.9 is recommended.\
    \ (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EQC
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens T-helper 1 cell
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000545/
    perturbed: false
    doi: 10.17989/ENCSR000EQC
    date_created: '2013-12-12T07:10:01.246367+00:00'
    date_released: '2010-12-14'
    submitter_comment: ''
