DNase-seq_ENCSR000ELH
DNase-seq ENCSR000ELH [biosample_summary="Homo sapiens keratinocyte female"]
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| Id: | DNase-seq/ENCSR000ELH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELH [biosample_summary="Homo sapiens keratinocyte female"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_internal_action: Released analysis {ENCAN529UAX|/analyses/ENCAN529UAX/} has in progress subobject document {39983f73-4e70-46f2-88e4-e9fd0660fc73|/documents/39983f73-4e70-46f2-88e4-e9fd0660fc73/} audit_warning: Alignment file {ENCFF117RNM|/files/ENCFF117RNM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35765456 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF117RNM|/files/ENCFF117RNM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELH | float |
DNase-seq_ENCSR000ELH |
DNase-seq ENCSR000ELH [biosample_summary="Homo sapiens keratinocyte female"]
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[0.112, 8.17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF245IFS.bed.gz | 508.19 KB | f9958ec46b7d0aa248059f5499deac8f |
| ENCFF245IFS.bed.gz.dvc | 100.0 B | e12ef35eef150318519f8e93bb6660ad |
| ENCFF245IFS.tabix.bed.gz | 449.83 KB | 1a192d80202a93c1748431478a7d14be |
| ENCFF245IFS.tabix.bed.gz.dvc | 106.0 B | 1a345a37b27551fab1befc22210f19d1 |
| ENCFF245IFS.tabix.bed.gz.tbi | 286.68 KB | 74ff4c587304ea812f59f00edd1efb3e |
| ENCFF245IFS.tabix.bed.gz.tbi.dvc | 110.0 B | a34190e10dca78bc3bb7da0b083d9b7a |
| genomic_resource.yaml | 2.76 KB | 7ba57b79eaa821fcae0592fac6e238c5 |
| genomic_resource_original.yaml | 2.68 KB | c554c526d81cf9f64334ab928a47fcef |
| statistics/ |