| Id: | DNase-seq/ENCSR000EKW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"] |
| Description: |
status: released biological_replicates: Rep 1 summary: expressing RNAi output_type: peaks audit_error: Alignment file {ENCFF181BXE|/files/ENCFF181BXE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 659193 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN324BDB|/analyses/ENCAN324BDB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKW | float |
DNase-seq_ENCSR000EKW |
DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"]
|
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[5, 283] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF312KXH.bed.gz | 12.33 KB | 7099a992578e8fc728c2b8551db995e1 |
| ENCFF312KXH.bed.gz.dvc | 99.0 B | 8fc3d6d2501fec8b69dc13c9d7be93e8 |
| ENCFF312KXH.tabix.bed.gz | 10.42 KB | 11976903bf031c5cf51e7158098044ff |
| ENCFF312KXH.tabix.bed.gz.dvc | 105.0 B | b8848a4a8fe13d6c05f1998f0352a7ea |
| ENCFF312KXH.tabix.bed.gz.tbi | 16.42 KB | e888bec652be081eb93087d9936cc925 |
| ENCFF312KXH.tabix.bed.gz.tbi.dvc | 109.0 B | ddf44097d8147818f4a25de1ff0cf745 |
| genomic_resource.yaml | 1.92 KB | b5b75a0e3e712208a942d03c6551a742 |
| genomic_resource_original.yaml | 1.83 KB | ae96ca14aeb54e94d536f220b4d5559e |
| statistics/ |