type: position_score
table:
  filename: ENCFF312KXH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EKW
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: expressing RNAi


    **output\_type**: peaks


    **audit\_error**: Alignment file {ENCFF181BXE|/files/ENCFF181BXE/} processed by
    DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for
    GRCh38 assembly has 659193 mapped reads. According to ENCODE standards, conventional
    DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate
    a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50
    million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped
    reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/})


    **audit\_internal\_action**: Archived analysis {ENCAN324BDB|/analyses/ENCAN324BDB/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EKW
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: expressing RNAi
    biosample_summary: Homo sapiens MCF-7 expressing RNAi
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0001203/
    perturbed: false
    doi: 10.17989/ENCSR000EKW
    date_created: '2013-12-12T07:07:49.496868+00:00'
    date_released: '2012-08-28'
    submitter_comment: ''
