Resource
| Id | ATAC-seq/ENCSR830ALP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR830ALP [biosample_summary="Homo sapiens activated T-cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN041QSD|/analyses/ENCAN041QSD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF466GWI|/files/ENCFF466GWI/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.891593. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF910SFN|/files/ENCFF910SFN/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.893802. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR830ALP | float |
ATAC-seq_ENCSR830ALP |
ATAC-seq ENCSR830ALP [biosample_summary="Homo sapiens activated T-cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"]
|
 |
[1.31, 44.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 66008388 | 2.05% | 114624 |
| chr1 | 6542652 | 2.63% | 11221 |
| chr2 | 5358119 | 2.21% | 9500 |
| chr3 | 4239532 | 2.14% | 7620 |
| chr4 | 2692347 | 1.42% | 4839 |
| chr5 | 3309940 | 1.82% | 5873 |
| chr6 | 4108682 | 2.41% | 7222 |
| chr7 | 3294363 | 2.07% | 5740 |
| chr8 | 2869603 | 1.98% | 5095 |
| chr9 | 2639249 | 1.91% | 4643 |
| chr10 | 3136571 | 2.34% | 5524 |
| chr11 | 3185023 | 2.36% | 5494 |
| chr12 | 3211815 | 2.41% | 5508 |
| chr13 | 1587439 | 1.39% | 2858 |
| chr14 | 2261705 | 2.11% | 3977 |
| chr15 | 2176593 | 2.13% | 3805 |
| chr16 | 2307310 | 2.55% | 3782 |
| chr17 | 3204496 | 3.85% | 5259 |
| chr18 | 1228384 | 1.53% | 2217 |
| chr19 | 2588573 | 4.42% | 4021 |
| chr20 | 1721979 | 2.67% | 2968 |
| chr21 | 853199 | 1.83% | 1473 |
| chr22 | 1332991 | 2.62% | 2181 |
| chrX | 1991489 | 1.28% | 3490 |
| chrY | 166334 | 0.29% | 314 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 114624 | 150 | 2923 | 575.87 | 485 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF350JTS.bed.gz | 4.56 MB | 245bbbafa6541cca487cca6d58ea0f8b |
| ENCFF350JTS.tabix.bed.gz | 1.26 MB | 674423ff3a2ff51e40db43e24c4b39f5 |
| ENCFF350JTS.tabix.bed.gz.tbi | 424.12 KB | 98c7cff58b6862200f94225068fcadc3 |
| genomic_resource.yaml | 2.94 KB | 459ca8f7a016a1fa80bca522481fbaef |
| statistics/ |