type: position_score
table:
  filename: ENCFF350JTS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR830ALP
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR830ALP [TISSUE: Homo sapiens activated T-cell male adult
    (43 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL
    Interleukin-2 for 72 hours]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: male adult (43 years) treated with anti-CD3 and anti-CD28 coated
    beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN041QSD|/analyses/ENCAN041QSD/}
    has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}


    **audit\_warning**: NRF (Non Redundant Fraction) is equal to the result of the
    division of the number of reads after duplicates removal by the total number of
    reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate
    complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but >
    0.7 is acceptable. ENCODE processed file {ENCFF466GWI|/files/ENCFF466GWI/} processed
    by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with
    NRF value of 0.891593.


    **audit\_warning**: NRF (Non Redundant Fraction) is equal to the result of the
    division of the number of reads after duplicates removal by the total number of
    reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate
    complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but >
    0.7 is acceptable. ENCODE processed file {ENCFF910SFN|/files/ENCFF910SFN/} processed
    by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with
    NRF value of 0.893802.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR830ALP
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: male adult (43 years) treated with anti-CD3 and anti-CD28
      coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours
    biosample_summary: Homo sapiens activated T-cell male adult (43 years) treated
      with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2
      for 72 hours
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
    perturbed: false
    doi: 10.17989/ENCSR830ALP
    date_created: '2021-09-13T18:01:26.166250+00:00'
    date_released: '2021-10-13'
    submitter_comment: ''
