Resource
| Id | ATAC-seq/ENCSR470ZNM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN376CST|/analyses/ENCAN376CST/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF207CZR|/files/ENCFF207CZR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 20164311 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF295IRG|/files/ENCFF295IRG/} (overlap peaks) and {ENCFF468CHZ|/files/ENCFF468CHZ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 122779 and 57282 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR470ZNM | float |
ATAC-seq_ENCSR470ZNM |
ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"]
|
 |
[1.73, 31.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42898142 | 1.33% | 91161 |
| chr1 | 3869836 | 1.55% | 8121 |
| chr2 | 3790438 | 1.57% | 8228 |
| chr3 | 3091937 | 1.56% | 6758 |
| chr4 | 2611043 | 1.37% | 5805 |
| chr5 | 2654571 | 1.46% | 5793 |
| chr6 | 2943273 | 1.72% | 6342 |
| chr7 | 2397989 | 1.50% | 5167 |
| chr8 | 2166872 | 1.49% | 4748 |
| chr9 | 1714348 | 1.24% | 3652 |
| chr10 | 2053478 | 1.53% | 4400 |
| chr11 | 2033214 | 1.51% | 4302 |
| chr12 | 2101598 | 1.58% | 4467 |
| chr13 | 1238685 | 1.08% | 2688 |
| chr14 | 1259795 | 1.18% | 2611 |
| chr15 | 1191875 | 1.17% | 2484 |
| chr16 | 1193011 | 1.32% | 2346 |
| chr17 | 1406567 | 1.69% | 2720 |
| chr18 | 971151 | 1.21% | 2182 |
| chr19 | 1111067 | 1.90% | 1940 |
| chr20 | 867385 | 1.35% | 1798 |
| chr21 | 409531 | 0.88% | 817 |
| chr22 | 504664 | 0.99% | 954 |
| chrX | 1238018 | 0.79% | 2659 |
| chrY | 77796 | 0.14% | 179 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91161 | 150 | 2558 | 470.58 | 406 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF295IRG.bed.gz | 2.92 MB | a16ada64be65980c95dd71ed8e58b152 |
| ENCFF295IRG.tabix.bed.gz | 999.12 KB | 7fe958796d0e53581ee8bf1fc848afcc |
| ENCFF295IRG.tabix.bed.gz.tbi | 441.53 KB | 5ed2ff04a427175470a2ffab4a32c851 |
| genomic_resource.yaml | 2.22 KB | 09834e9fd767343dd9d0f1f5b01ca009 |
| statistics/ |