| Id: | ATAC-seq/ENCSR470ZNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN376CST|/analyses/ENCAN376CST/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF207CZR|/files/ENCFF207CZR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 20164311 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF295IRG|/files/ENCFF295IRG/} (overlap peaks) and {ENCFF468CHZ|/files/ENCFF468CHZ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 122779 and 57282 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR470ZNM | float |
ATAC-seq_ENCSR470ZNM |
ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"]
|
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[1.73, 31.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF295IRG.bed.gz | 2.92 MB | a16ada64be65980c95dd71ed8e58b152 |
| ENCFF295IRG.bed.gz.dvc | 101.0 B | 60ae06a27004d42cf93c6d537ccca853 |
| ENCFF295IRG.tabix.bed.gz | 999.12 KB | 7fe958796d0e53581ee8bf1fc848afcc |
| ENCFF295IRG.tabix.bed.gz.dvc | 107.0 B | 856eeb310fdc794d1fc524f0e0234078 |
| ENCFF295IRG.tabix.bed.gz.tbi | 441.53 KB | 5ed2ff04a427175470a2ffab4a32c851 |
| ENCFF295IRG.tabix.bed.gz.tbi.dvc | 110.0 B | 7d89e0cdde5ac3e21549747cc3554e64 |
| genomic_resource.yaml | 2.22 KB | 09834e9fd767343dd9d0f1f5b01ca009 |
| genomic_resource_original.yaml | 2.15 KB | bdeed8cdd8a7cc729347fd4a862f307c |
| statistics/ |