type: position_score
table:
  filename: ENCFF295IRG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR470ZNM
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR470ZNM [biosample_summary="Homo sapiens HG03060"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\_action**:\
    \ Released analysis {ENCAN376CST|/analyses/ENCAN376CST/} has in progress subobject\
    \ quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\n\
    **audit\\_warning**: Alignment file {ENCFF207CZR|/files/ENCFF207CZR/} processed\
    \ by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 20164311 usable fragments. According\
    \ to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline\
    \ should have > 25 million usable fragments. 20-25 million is acceptable and <\
    \ 15 million is not compliant.\n\n**audit\\_warning**: According to ENCODE4 standards,\
    \ ATAC-seq assays processed by the uniform processing pipeline should have either\
    \ >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded\
    \ peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or\
    \ <50k respectively is not compliant. File(s) {ENCFF295IRG|/files/ENCFF295IRG/}\
    \ (overlap peaks) and {ENCFF468CHZ|/files/ENCFF468CHZ/} (IDR thresholded peaks)\
    \ processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 122779 and 57282 peaks."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR470ZNM
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HG03060
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0010863/
    perturbed: false
    doi: 10.17989/ENCSR470ZNM
    date_created: '2020-11-24T22:02:41.588042+00:00'
    date_released: '2021-02-11'
    submitter_comment: ''
