TF_ChIP-seq_ENCSR998LUY
TF_ChIP-seq ENCSR998LUY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TARDBP" and target="TARDBP"]
×
| Id: | TF_ChIP-seq/ENCSR998LUY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR998LUY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TARDBP" and target="TARDBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TARDBP output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN709KQN|/analyses/ENCAN709KQN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138RFW|/files/ENCFF138RFW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138RFW|/files/ENCFF138RFW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.33. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR998LUY | float |
TF_ChIP-seq_ENCSR998LUY |
TF_ChIP-seq ENCSR998LUY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TARDBP" and target="TARDBP"]
|
|
[11.7, 369] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF507WOQ.bed.gz | 536.2 KB | 64de02777aaadd4e6f0cf06e32f7c75a |
| ENCFF507WOQ.bed.gz.dvc | 100.0 B | fb811ea757873715969e43f53d9532c9 |
| ENCFF507WOQ.tabix.bed.gz | 412.39 KB | 240eff815ec0f1a61d75df8d9ada4120 |
| ENCFF507WOQ.tabix.bed.gz.dvc | 106.0 B | c9e61d0afff1139eee55af18b1c9ebe8 |
| ENCFF507WOQ.tabix.bed.gz.tbi | 149.45 KB | f44900619ea3aa36e1eaca3084a496b1 |
| ENCFF507WOQ.tabix.bed.gz.tbi.dvc | 110.0 B | 25dd2dc88fda0ce5ee0e6090c4a22446 |
| genomic_resource.yaml | 2.97 KB | 5cf7edaf567454c28433fb7259a9cfd2 |
| genomic_resource_original.yaml | 2.81 KB | d2e34419ff48ebb0d40ec0c8a684b280 |
| statistics/ |