TF_ChIP-seq_ENCSR998AJK
TF_ChIP-seq ENCSR998AJK [biosample_summary="Homo sapiens K562" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR998AJK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR998AJK [biosamplesummary="Homo sapiens K562" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN942BVL|/analyses/ENCAN942BVL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF986GTB|/files/ENCFF986GTB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF986GTB|/files/ENCFF986GTB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR998AJK | float |
TF_ChIP-seq_ENCSR998AJK |
TF_ChIP-seq ENCSR998AJK [biosample_summary="Homo sapiens K562" and target="NRF1"]
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[10.3, 6.14e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF493ABN.bed.gz | 668.92 KB | d5fff8c03ee7b8067da264cb490f4327 |
| ENCFF493ABN.bed.gz.dvc | 100.0 B | 9efacc9791a19b687a7d8e2a5a409e34 |
| ENCFF493ABN.tabix.bed.gz | 456.67 KB | 02946c359c8afc3f0fa3a4564f2c1668 |
| ENCFF493ABN.tabix.bed.gz.dvc | 106.0 B | 1bac52ef318da4810d74dd9a39b943a6 |
| ENCFF493ABN.tabix.bed.gz.tbi | 186.22 KB | 27ddf029bb4fc9fd855f1698d4b1bfed |
| ENCFF493ABN.tabix.bed.gz.tbi.dvc | 110.0 B | a0b5a000bffbcc13fa2e986b2e9e7621 |
| genomic_resource.yaml | 2.64 KB | 29707262af3be66bdac51beacf28ff39 |
| genomic_resource_original.yaml | 2.54 KB | 6497b8837fc63a5b2ef412a3ce9bb7d5 |
| statistics/ |