TF_ChIP-seq_ENCSR996ESX
TF_ChIP-seq ENCSR996ESX [biosample_summary="Homo sapiens K562" and target="NFRKB"]
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| Id: | TF_ChIP-seq/ENCSR996ESX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR996ESX [biosamplesummary="Homo sapiens K562" and target="NFRKB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF779KIS|/files/ENCFF779KIS/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN758DXU|/analyses/ENCAN758DXU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF903TVU|/files/ENCFF903TVU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16762160 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NFRKB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903TVU|/files/ENCFF903TVU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903TVU|/files/ENCFF903TVU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF112SEL|/files/ENCFF112SEL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF112SEL|/files/ENCFF112SEL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR996ESX | float |
TF_ChIP-seq_ENCSR996ESX |
TF_ChIP-seq ENCSR996ESX [biosample_summary="Homo sapiens K562" and target="NFRKB"]
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[10.7, 2.69e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF779KIS.bed.gz | 144.15 KB | ef3e0a027be245d770f97067ee92e74e |
| ENCFF779KIS.bed.gz.dvc | 100.0 B | 46773a852ea5ebea30213a84814b39d9 |
| ENCFF779KIS.tabix.bed.gz | 104.51 KB | b2611dcf5b076b2f05638339cf7ab62a |
| ENCFF779KIS.tabix.bed.gz.dvc | 106.0 B | 605a4da6a9a1934e0558789674fea3f3 |
| ENCFF779KIS.tabix.bed.gz.tbi | 58.54 KB | 0994b843b497b5efbce061a8d7b33991 |
| ENCFF779KIS.tabix.bed.gz.tbi.dvc | 109.0 B | df906eb073c934a748153451c7b57e87 |
| genomic_resource.yaml | 5.17 KB | bcde0fe40395f42de095e11855ac1351 |
| genomic_resource_original.yaml | 5.07 KB | 597024d42458cef25da63c11d7a0fc2e |
| statistics/ |