TF_ChIP-seq_ENCSR996DUT
TF_ChIP-seq ENCSR996DUT [biosample_summary="Homo sapiens A549" and target="JUN"]
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| Id: | TF_ChIP-seq/ENCSR996DUT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR996DUT [biosamplesummary="Homo sapiens A549" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN582SBH|/analyses/ENCAN582SBH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF127HJG|/files/ENCFF127HJG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF853NYR|/files/ENCFF853NYR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18922036 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF755QDV|/files/ENCFF755QDV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF755QDV|/files/ENCFF755QDV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR996DUT | float |
TF_ChIP-seq_ENCSR996DUT |
TF_ChIP-seq ENCSR996DUT [biosample_summary="Homo sapiens A549" and target="JUN"]
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[5.24, 201] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF127HJG.bed.gz | 31.69 KB | 42f39c07f864523915ddea3e24635a9d |
| ENCFF127HJG.bed.gz.dvc | 99.0 B | a134fb8a7f57aaf937c6c8d32ad6c74d |
| ENCFF127HJG.tabix.bed.gz | 21.28 KB | ea978add89b1b2f393ca597d1ff02133 |
| ENCFF127HJG.tabix.bed.gz.dvc | 105.0 B | 9fa87528f577bcbdfbffb9ab8445dd34 |
| ENCFF127HJG.tabix.bed.gz.tbi | 21.7 KB | e00f5f673321723e0a11342cc001b0b2 |
| ENCFF127HJG.tabix.bed.gz.tbi.dvc | 109.0 B | 7da7e2e12e18d6f6a285a76cb0cea1df |
| genomic_resource.yaml | 3.32 KB | 42d717062731253493c04bb3d1406606 |
| genomic_resource_original.yaml | 3.23 KB | 3c3b9c3777085d41bb600f99d4b52ed6 |
| statistics/ |