TF_ChIP-seq_ENCSR992KMO
TF_ChIP-seq ENCSR992KMO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTERF4" and target="MTERF4"]
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| Id: | TF_ChIP-seq/ENCSR992KMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR992KMO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTERF4" and target="MTERF4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MTERF4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN029HFD|/analyses/ENCAN029HFD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF714NDO|/files/ENCFF714NDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF714NDO|/files/ENCFF714NDO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.44. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF136DUI|/files/ENCFF136DUI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF136DUI|/files/ENCFF136DUI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR992KMO | float |
TF_ChIP-seq_ENCSR992KMO |
TF_ChIP-seq ENCSR992KMO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTERF4" and target="MTERF4"]
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[12.6, 492] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF417LFH.bed.gz | 260.16 KB | 741a39407945ccbedc67f298eeb6b1dc |
| ENCFF417LFH.bed.gz.dvc | 100.0 B | 163d9776b87e94d1917ac1f59847b423 |
| ENCFF417LFH.tabix.bed.gz | 197.87 KB | 78ea69d23518887918f1d1ca7e360e10 |
| ENCFF417LFH.tabix.bed.gz.dvc | 106.0 B | 307646c0f349e13fe251bc5d5c243706 |
| ENCFF417LFH.tabix.bed.gz.tbi | 83.99 KB | 777b30cc924bba6e0297e20808e280fb |
| ENCFF417LFH.tabix.bed.gz.tbi.dvc | 109.0 B | ef2d4a616410a6dfd10dc2aacdfcd7bb |
| genomic_resource.yaml | 4.24 KB | c5a71d861a0881cec64905d8ee0e1bb7 |
| genomic_resource_original.yaml | 4.07 KB | d1bd3a0ef3ce3cec3cac4fd99bf0f815 |
| statistics/ |