TF_ChIP-seq_ENCSR991ELG
TF_ChIP-seq ENCSR991ELG [biosample_summary="Homo sapiens K562" and target="SP1"]
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| Id: | TF_ChIP-seq/ENCSR991ELG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR991ELG [biosamplesummary="Homo sapiens K562" and target="SP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN914VAT|/analyses/ENCAN914VAT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF452LDK|/files/ENCFF452LDK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF487SUP|/files/ENCFF487SUP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16024931 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF758LME|/files/ENCFF758LME/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF758LME|/files/ENCFF758LME/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR991ELG | float |
TF_ChIP-seq_ENCSR991ELG |
TF_ChIP-seq ENCSR991ELG [biosample_summary="Homo sapiens K562" and target="SP1"]
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[10.9, 2.93e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF452LDK.bed.gz | 263.22 KB | c9f1fe671a19405e9d00c16311861993 |
| ENCFF452LDK.bed.gz.dvc | 100.0 B | d0b0a6cf9ad20c36a279b5af1bce5a88 |
| ENCFF452LDK.tabix.bed.gz | 196.21 KB | 3375e67fabd92872379c99cdafb14ab8 |
| ENCFF452LDK.tabix.bed.gz.dvc | 106.0 B | d958cfe58eb7f44e5b0e2627d3371a21 |
| ENCFF452LDK.tabix.bed.gz.tbi | 94.5 KB | 6a99a3397acfb088febfb775f7394572 |
| ENCFF452LDK.tabix.bed.gz.tbi.dvc | 109.0 B | ceb020ac13325b2b3c03638694da90b3 |
| genomic_resource.yaml | 3.32 KB | c1383ea372f995b8b9686f308a322e37 |
| genomic_resource_original.yaml | 3.23 KB | cd5740f9ab4c30d6a08881d3a19a8919 |
| statistics/ |