TF_ChIP-seq_ENCSR991ADX
TF_ChIP-seq ENCSR991ADX [biosample_summary="Homo sapiens HepG2" and target="U2AF2"]
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| Id: | TF_ChIP-seq/ENCSR991ADX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR991ADX [biosamplesummary="Homo sapiens HepG2" and target="U2AF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN590TDJ|/analyses/ENCAN590TDJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF562ADR|/files/ENCFF562ADR/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF641AUO|/files/ENCFF641AUO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12516755 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting U2AF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF883UWI|/files/ENCFF883UWI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14744695 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting U2AF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF883UWI|/files/ENCFF883UWI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF883UWI|/files/ENCFF883UWI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR991ADX | float |
TF_ChIP-seq_ENCSR991ADX |
TF_ChIP-seq ENCSR991ADX [biosample_summary="Homo sapiens HepG2" and target="U2AF2"]
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[4.65, 258] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF562ADR.bed.gz | 54.31 KB | 9eed5390c042f48d31955c75a3366cd0 |
| ENCFF562ADR.bed.gz.dvc | 99.0 B | 6db22dfa50a0e51b957b6752cc48dd71 |
| ENCFF562ADR.tabix.bed.gz | 42.67 KB | 96f9a306220108cccbb42d4e335d764e |
| ENCFF562ADR.tabix.bed.gz.dvc | 105.0 B | 8f295d6fa08e37ce0a911e938d117f36 |
| ENCFF562ADR.tabix.bed.gz.tbi | 30.24 KB | 776ce1a5116a3262eb23287f5a242e38 |
| ENCFF562ADR.tabix.bed.gz.tbi.dvc | 109.0 B | 19b41e7677c8561de0f2d4c2966a9ddb |
| genomic_resource.yaml | 3.83 KB | a2409390ca377d20b2e049a727029d8f |
| genomic_resource_original.yaml | 3.73 KB | 71d25441ee9b0f663d66396a36916726 |
| statistics/ |