TF_ChIP-seq_ENCSR989LMJ
TF_ChIP-seq ENCSR989LMJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RELA" and target="RELA"]
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| Id: | TF_ChIP-seq/ENCSR989LMJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR989LMJ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RELA" and target="RELA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RELA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN043ZLK|/analyses/ENCAN043ZLK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF041SNO|/files/ENCFF041SNO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF041SNO|/files/ENCFF041SNO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF083YPT|/files/ENCFF083YPT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF083YPT|/files/ENCFF083YPT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.02. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF095PJP|/files/ENCFF095PJP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.71. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR989LMJ | float |
TF_ChIP-seq_ENCSR989LMJ |
TF_ChIP-seq ENCSR989LMJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RELA" and target="RELA"]
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[10.5, 428] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF095PJP.bed.gz | 98.76 KB | aab8bda8e3c6d3ec6f9434ff0c681dc5 |
| ENCFF095PJP.bed.gz.dvc | 100.0 B | a7ba6afce8b44da2a27123db94b03056 |
| ENCFF095PJP.tabix.bed.gz | 70.51 KB | f9dff4f6b5e181242fa5f8b8fceaba90 |
| ENCFF095PJP.tabix.bed.gz.dvc | 105.0 B | f94851c2dc133bafb06ff6211adce8ff |
| ENCFF095PJP.tabix.bed.gz.tbi | 45.83 KB | d5aa5b2a31976f8595206dd6125c100b |
| ENCFF095PJP.tabix.bed.gz.tbi.dvc | 109.0 B | 19862353fa3f8f617771ece464ff8cec |
| genomic_resource.yaml | 4.74 KB | fbb4e55fcf94481e7195f81d31e6e103 |
| genomic_resource_original.yaml | 4.58 KB | ea9a9cde6fe29b4ad13d40f2d0471b77 |
| statistics/ |