TF_ChIP-seq_ENCSR987GXT
TF_ChIP-seq ENCSR987GXT [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR987GXT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR987GXT [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN592HEV|/analyses/ENCAN592HEV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF121HVG|/files/ENCFF121HVG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17828414 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF012OUS|/files/ENCFF012OUS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF012OUS|/files/ENCFF012OUS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.20. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR987GXT | float |
TF_ChIP-seq_ENCSR987GXT |
TF_ChIP-seq ENCSR987GXT [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"]
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[9.52, 1.96e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF765BRD.bed.gz | 1.2 MB | 5910eb61c8a1c3124666845d4245da27 |
| ENCFF765BRD.bed.gz.dvc | 101.0 B | ff246ce54e6ffe304f6371f994446258 |
| ENCFF765BRD.tabix.bed.gz | 854.32 KB | f7bafca7528f77e993dc7273a5a739cc |
| ENCFF765BRD.tabix.bed.gz.dvc | 106.0 B | 85bcc728b2ac83abc5a3caab37f3af62 |
| ENCFF765BRD.tabix.bed.gz.tbi | 384.78 KB | 81aa71e78a50c7bc4707a4945e75cfe1 |
| ENCFF765BRD.tabix.bed.gz.tbi.dvc | 110.0 B | 8e590cf385d9cc9343d9126b9927072c |
| genomic_resource.yaml | 3.56 KB | 1b3bebf37121bc33652747dad0bd2c12 |
| genomic_resource_original.yaml | 3.45 KB | 88c6e3b518c86fd89dd2555cf825a25e |
| statistics/ |