TF_ChIP-seq_ENCSR987FPY
TF_ChIP-seq ENCSR987FPY [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"]
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| Id: | TF_ChIP-seq/ENCSR987FPY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR987FPY [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN983LLD|/analyses/ENCAN983LLD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF655HAA|/files/ENCFF655HAA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF655HAA|/files/ENCFF655HAA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF079SXR|/files/ENCFF079SXR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF079SXR|/files/ENCFF079SXR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR987FPY | float |
TF_ChIP-seq_ENCSR987FPY |
TF_ChIP-seq ENCSR987FPY [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"]
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[8.54, 389] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF953GZH.bed.gz | 12.08 KB | 267bbe8eeb3b1eb1535ac7a38b0b2c8d |
| ENCFF953GZH.bed.gz.dvc | 99.0 B | de7cca9d6e2d9c3bc806efa8402e08af |
| ENCFF953GZH.tabix.bed.gz | 8.17 KB | 46db3435ccde5846568841b1800de8ae |
| ENCFF953GZH.tabix.bed.gz.dvc | 104.0 B | 7ff438f7e0c2144dccbfecaea73c0c10 |
| ENCFF953GZH.tabix.bed.gz.tbi | 10.54 KB | dd3e91210394c9532594e065ab916ea5 |
| ENCFF953GZH.tabix.bed.gz.tbi.dvc | 109.0 B | 6a937301ded323880af34242e3b249e1 |
| genomic_resource.yaml | 4.22 KB | 98f477e75aadbdbf632565d829fdc273 |
| genomic_resource_original.yaml | 4.06 KB | 962e846812e3c631fd5fddc41d7fa8dc |
| statistics/ |