TF_ChIP-seq_ENCSR986CDX
TF_ChIP-seq ENCSR986CDX [biosample_summary="Homo sapiens K562" and target="NEUROD1"]
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| Id: | TF_ChIP-seq/ENCSR986CDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR986CDX [biosamplesummary="Homo sapiens K562" and target="NEUROD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN671TLH|/analyses/ENCAN671TLH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF325ZZV|/files/ENCFF325ZZV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18767322 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NEUROD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF637BQA|/files/ENCFF637BQA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10716907 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NEUROD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF852XSD|/files/ENCFF852XSD/}, {ENCFF581YKY|/files/ENCFF581YKY/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.37 and a self consistency ratio of 4.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF823QCH|/files/ENCFF823QCH/}, {ENCFF872LIG|/files/ENCFF872LIG/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.37 and a self consistency ratio of 4.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR986CDX | float |
TF_ChIP-seq_ENCSR986CDX |
TF_ChIP-seq ENCSR986CDX [biosample_summary="Homo sapiens K562" and target="NEUROD1"]
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[4.62, 404] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF581YKY.bed.gz | 246.61 KB | de1c71d16bed9d96dcff38981ba5dd30 |
| ENCFF581YKY.bed.gz.dvc | 100.0 B | 977cfd2145901c4362a0024b41e73a03 |
| ENCFF581YKY.tabix.bed.gz | 179.42 KB | b027cab0f81ca5fc47fb0f301987f213 |
| ENCFF581YKY.tabix.bed.gz.dvc | 106.0 B | 93c0e2a8b7948a594279c8ab6527a18c |
| ENCFF581YKY.tabix.bed.gz.tbi | 98.37 KB | 501af98e78f1640c4501dccaa184dd20 |
| ENCFF581YKY.tabix.bed.gz.tbi.dvc | 110.0 B | a6ac859d445fabeeb6febe312f64625c |
| genomic_resource.yaml | 4.02 KB | ebcd787b62787fac28e383cead79f52b |
| genomic_resource_original.yaml | 3.92 KB | f8d4780845572ec97967d39d1af7a4b9 |
| statistics/ |