TF_ChIP-seq_ENCSR985OYK
TF_ChIP-seq ENCSR985OYK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11" and target="ZBTB11"]
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| Id: | TF_ChIP-seq/ENCSR985OYK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR985OYK [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11" and target="ZBTB11"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN549OEF|/analyses/ENCAN549OEF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN549OEF|/analyses/ENCAN549OEF/} has in progress subobject document {4315481c-1eff-4a83-9f1c-cfc96269fc9a|/documents/4315481c-1eff-4a83-9f1c-cfc96269fc9a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465SQQ|/files/ENCFF465SQQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465SQQ|/files/ENCFF465SQQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR985OYK | float |
TF_ChIP-seq_ENCSR985OYK |
TF_ChIP-seq ENCSR985OYK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11" and target="ZBTB11"]
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[14.7, 2.23e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF227HVU.bed.gz | 74.79 KB | ed4dfdea1e3ee63fe51e82eea5399fc2 |
| ENCFF227HVU.bed.gz.dvc | 99.0 B | 9a41adb1378b212ac8934a2e06cef39d |
| ENCFF227HVU.tabix.bed.gz | 52.01 KB | 65c486891f9c21cdbfb31dc0c1ead3fb |
| ENCFF227HVU.tabix.bed.gz.dvc | 105.0 B | 95a769a4ed5b86d3194d4410fd6fb6dd |
| ENCFF227HVU.tabix.bed.gz.tbi | 38.45 KB | eed6ba9c984235a88a0462a59285b786 |
| ENCFF227HVU.tabix.bed.gz.tbi.dvc | 109.0 B | 45aed456df8c0e5fff3ca511876f2db7 |
| genomic_resource.yaml | 3.18 KB | 2387f443865810b9ab49720404f9cd67 |
| genomic_resource_original.yaml | 3.02 KB | d40cb3eb778ac46327d3a690e380ecf5 |
| statistics/ |