TF_ChIP-seq_ENCSR984IXF
TF_ChIP-seq ENCSR984IXF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709" and target="ZNF709"]
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| Id: | TF_ChIP-seq/ENCSR984IXF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR984IXF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709" and target="ZNF709"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN894HXV|/analyses/ENCAN894HXV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN894HXV|/analyses/ENCAN894HXV/} has in progress subobject document {5a741800-d8ed-41a1-bed0-5338cb36afa1|/documents/5a741800-d8ed-41a1-bed0-5338cb36afa1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF244DYF|/files/ENCFF244DYF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF244DYF|/files/ENCFF244DYF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF375TMH|/files/ENCFF375TMH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF375TMH|/files/ENCFF375TMH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR984IXF | float |
TF_ChIP-seq_ENCSR984IXF |
TF_ChIP-seq ENCSR984IXF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709" and target="ZNF709"]
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[10, 521] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF371EUY.bed.gz | 313.44 KB | c063eb4d54aa386b8d15a9beb2453636 |
| ENCFF371EUY.bed.gz.dvc | 100.0 B | 546b9506454782fd625cbf0d9f314f8f |
| ENCFF371EUY.tabix.bed.gz | 256.11 KB | 2b1ff6a9ddb6a0ee2eb4c5d3a2b7fc8d |
| ENCFF371EUY.tabix.bed.gz.dvc | 106.0 B | e19f25bf6114805269a03dfde39982e1 |
| ENCFF371EUY.tabix.bed.gz.tbi | 97.63 KB | 57ba16574e7fc4100f75af814d74f1db |
| ENCFF371EUY.tabix.bed.gz.tbi.dvc | 109.0 B | 8b2158b516a780e9003421628cf53757 |
| genomic_resource.yaml | 4.45 KB | 901a57f48faa45eb44df3962c75a2226 |
| genomic_resource_original.yaml | 4.29 KB | 8bfc6f2953bf98fd7704cd8231318cb4 |
| statistics/ |