TF_ChIP-seq_ENCSR983KRB
TF_ChIP-seq ENCSR983KRB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTA1" and target="MTA1"]
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| Id: | TF_ChIP-seq/ENCSR983KRB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR983KRB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTA1" and target="MTA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MTA1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN477DHU|/analyses/ENCAN477DHU/} has in progress subobject document {9f7822b6-86bc-4843-ab36-3e5343f38352|/documents/9f7822b6-86bc-4843-ab36-3e5343f38352/} audit_internal_action: Released analysis {ENCAN477DHU|/analyses/ENCAN477DHU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF467GQC|/files/ENCFF467GQC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF467GQC|/files/ENCFF467GQC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF367LVR|/files/ENCFF367LVR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF367LVR|/files/ENCFF367LVR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF381WCL|/files/ENCFF381WCL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.91 and a self consistency ratio of 3.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF038CCB|/files/ENCFF038CCB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.91 and a self consistency ratio of 3.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR983KRB | float |
TF_ChIP-seq_ENCSR983KRB |
TF_ChIP-seq ENCSR983KRB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTA1" and target="MTA1"]
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[11.2, 301] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF381WCL.bed.gz | 385.88 KB | 5407eb11c1b9bf051f026f56a5ca43fe |
| ENCFF381WCL.bed.gz.dvc | 100.0 B | 166b2b53e5c52580d2d0b14d8dae1b1e |
| ENCFF381WCL.tabix.bed.gz | 326.1 KB | 9ca2ad6edd7b3fdc3681e13ae5442579 |
| ENCFF381WCL.tabix.bed.gz.dvc | 106.0 B | ea127ee64ec621194d53a27100178573 |
| ENCFF381WCL.tabix.bed.gz.tbi | 116.46 KB | 74e24fec2df69c7c2abb8cffc5bd2f20 |
| ENCFF381WCL.tabix.bed.gz.tbi.dvc | 110.0 B | b6666950bbe75ab396484287026a925e |
| genomic_resource.yaml | 5.48 KB | 91cf28b3211cad0ff25f16630ed4f146 |
| genomic_resource_original.yaml | 5.32 KB | 76df840eac23073ee2dd1e38dcc75f47 |
| statistics/ |