TF_ChIP-seq_ENCSR982CFC
TF_ChIP-seq ENCSR982CFC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2" and target="NR0B2"]
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| Id: | TF_ChIP-seq/ENCSR982CFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR982CFC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2" and target="NR0B2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN520YKP|/analyses/ENCAN520YKP/} has in progress subobject document {443ed138-1f79-4791-a9ed-ba4a6bdaac07|/documents/443ed138-1f79-4791-a9ed-ba4a6bdaac07/} audit_internal_action: Released analysis {ENCAN520YKP|/analyses/ENCAN520YKP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF378HRX|/files/ENCFF378HRX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF378HRX|/files/ENCFF378HRX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF265MAE|/files/ENCFF265MAE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF265MAE|/files/ENCFF265MAE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR982CFC | float |
TF_ChIP-seq_ENCSR982CFC |
TF_ChIP-seq ENCSR982CFC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2" and target="NR0B2"]
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[12.8, 440] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF996LQH.bed.gz | 221.89 KB | aba29ce0b8ab3e458281628f1c4df8b0 |
| ENCFF996LQH.bed.gz.dvc | 100.0 B | 527f2c74d7bc0d7c1a01109bd7fe3c05 |
| ENCFF996LQH.tabix.bed.gz | 168.21 KB | 2a331e902348e8d5827dff6e47c9b8b0 |
| ENCFF996LQH.tabix.bed.gz.dvc | 106.0 B | a55ce622a5816c007ed5f6e4a0a15f51 |
| ENCFF996LQH.tabix.bed.gz.tbi | 80.08 KB | 9fb0bde26d9c512df9c30ea8f25c9648 |
| ENCFF996LQH.tabix.bed.gz.tbi.dvc | 109.0 B | 8d202835e64aa284c6a8226a69075c61 |
| genomic_resource.yaml | 4.44 KB | c2f0544de84cce43060dcf9f56f235cd |
| genomic_resource_original.yaml | 4.28 KB | e31ecd0379f513637ea0456aba73fd65 |
| statistics/ |