| Id: | TF_ChIP-seq/ENCSR978EQY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR978EQY [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2" and target="GLI2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN576IFR|/analyses/ENCAN576IFR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF301XIL|/files/ENCFF301XIL/} processed by ChIP-seq ENCODE4 GRCh38 pipeline has 18197180 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GLI2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF576SDC|/files/ENCFF576SDC/} processed by ChIP-seq ENCODE4 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 4.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF700EUN|/files/ENCFF700EUN/} processed by ChIP-seq ENCODE4 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 4.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR978EQY | float |
TF_ChIP-seq_ENCSR978EQY |
TF_ChIP-seq ENCSR978EQY [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2" and target="GLI2"]
|
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[10.6, 790] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF576SDC.bed.gz | 93.45 KB | 361e8492734778f0b965d460aab9fcd3 |
| ENCFF576SDC.bed.gz.dvc | 99.0 B | c2d1596ffe98e460dd762a1c624cb32c |
| ENCFF576SDC.tabix.bed.gz | 61.35 KB | 28b9a4f6b664e775962e5e19304767b7 |
| ENCFF576SDC.tabix.bed.gz.dvc | 105.0 B | d3da7c727c23c7506bda88ae397d76d2 |
| ENCFF576SDC.tabix.bed.gz.tbi | 48.37 KB | 00be4b12d5b277269fd689c0074b8ab7 |
| ENCFF576SDC.tabix.bed.gz.tbi.dvc | 109.0 B | da37c5845db26a924179b3b0ce26a004 |
| genomic_resource.yaml | 3.3 KB | 748a53e43f4fc946ae683362aaa00c64 |
| genomic_resource_original.yaml | 3.12 KB | b7ec7d9b934389a26eaaed6d6c2b4cbf |
| statistics/ |