TF_ChIP-seq_ENCSR978DQT
TF_ChIP-seq ENCSR978DQT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX1" and target="ZHX1"]
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| Id: | TF_ChIP-seq/ENCSR978DQT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR978DQT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX1" and target="ZHX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZHX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN048DIM|/analyses/ENCAN048DIM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF862TDM|/files/ENCFF862TDM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 19654812 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZHX1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF343WGN|/files/ENCFF343WGN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF343WGN|/files/ENCFF343WGN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF862TDM|/files/ENCFF862TDM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF862TDM|/files/ENCFF862TDM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR978DQT | float |
TF_ChIP-seq_ENCSR978DQT |
TF_ChIP-seq ENCSR978DQT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX1" and target="ZHX1"]
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[7.43, 418] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624UXU.bed.gz | 243.74 KB | ac4080886c494690ef9dbed66b7201b6 |
| ENCFF624UXU.bed.gz.dvc | 100.0 B | ff3b97f5aa14311da00782f1379255bb |
| ENCFF624UXU.tabix.bed.gz | 194.94 KB | 14b5f4657f7dec951309042f832ff735 |
| ENCFF624UXU.tabix.bed.gz.dvc | 106.0 B | 76a75b0e8c897b8cfc9b7d8c4991735f |
| ENCFF624UXU.tabix.bed.gz.tbi | 89.91 KB | 96f8d9824c7da3f8b68c6cc73fef5cea |
| ENCFF624UXU.tabix.bed.gz.tbi.dvc | 109.0 B | 9dcec3dd3e04b29e6a451545b30b5661 |
| genomic_resource.yaml | 4.71 KB | 5d12adb25c1e42a9b7746d2a278b46a9 |
| genomic_resource_original.yaml | 4.54 KB | 02db8d588f3d15f80011c7b68243249a |
| statistics/ |