TF_ChIP-seq_ENCSR977FEF
TF_ChIP-seq ENCSR977FEF [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1" and target="PRDM1"]
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| Id: | TF_ChIP-seq/ENCSR977FEF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR977FEF [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1" and target="PRDM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN791DBU|/analyses/ENCAN791DBU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN791DBU|/analyses/ENCAN791DBU/} has in progress subobject document {797512d2-423d-4397-bce2-f12d53786a9d|/documents/797512d2-423d-4397-bce2-f12d53786a9d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF218DHR|/files/ENCFF218DHR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF218DHR|/files/ENCFF218DHR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF023OSA|/files/ENCFF023OSA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF023OSA|/files/ENCFF023OSA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR977FEF | float |
TF_ChIP-seq_ENCSR977FEF |
TF_ChIP-seq ENCSR977FEF [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1" and target="PRDM1"]
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[14.8, 6.02e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF719BHI.bed.gz | 263.22 KB | 88ec448db72216c1b3bb123fe6d89d38 |
| ENCFF719BHI.bed.gz.dvc | 100.0 B | ce1b2c95601bba175a8929175cf541e6 |
| ENCFF719BHI.tabix.bed.gz | 174.33 KB | 3a801d2c0b00930ec902a3c65612a2b4 |
| ENCFF719BHI.tabix.bed.gz.dvc | 106.0 B | bd472d00fb8bbe2ea784b3b4b2667286 |
| ENCFF719BHI.tabix.bed.gz.tbi | 94.97 KB | 95e9f2a1ab424097a626b9ea325c9396 |
| ENCFF719BHI.tabix.bed.gz.tbi.dvc | 109.0 B | 6b95570764ea0806023a7fa4faa340e1 |
| genomic_resource.yaml | 4.44 KB | 12ed113debeb0651b2e861b66546fb5b |
| genomic_resource_original.yaml | 4.28 KB | a3e484e9c3f2aaaf861459261a9ed0cd |
| statistics/ |