TF_ChIP-seq_ENCSR974OFJ
TF_ChIP-seq ENCSR974OFJ [biosample_summary="Homo sapiens GM12878" and target="KLF5"]
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| Id: | TF_ChIP-seq/ENCSR974OFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR974OFJ [biosamplesummary="Homo sapiens GM12878" and target="KLF5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN193NLE|/analyses/ENCAN193NLE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF002JGD|/files/ENCFF002JGD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF002JGD|/files/ENCFF002JGD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF931ITC|/files/ENCFF931ITC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF931ITC|/files/ENCFF931ITC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR974OFJ | float |
TF_ChIP-seq_ENCSR974OFJ |
TF_ChIP-seq ENCSR974OFJ [biosample_summary="Homo sapiens GM12878" and target="KLF5"]
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[11.1, 1.65e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF827ZLB.bed.gz | 251.01 KB | 8522928cab6ad14973b5bb00ec993f01 |
| ENCFF827ZLB.bed.gz.dvc | 100.0 B | 4a52d261f6d31d8a3b5a1306ab592efb |
| ENCFF827ZLB.tabix.bed.gz | 186.85 KB | e6f3a1c9d5166fba7cb47c1c38fb15bf |
| ENCFF827ZLB.tabix.bed.gz.dvc | 106.0 B | 460c5d4b4961bdc99ae62a0563a0818b |
| ENCFF827ZLB.tabix.bed.gz.tbi | 92.87 KB | 50385c6decb03d55068c7af5afc0da43 |
| ENCFF827ZLB.tabix.bed.gz.tbi.dvc | 109.0 B | e7b72ca2a9b8527219e9f53a348e6dee |
| genomic_resource.yaml | 4.49 KB | baf327570b219275e7d5ffc1f333c99c |
| genomic_resource_original.yaml | 4.39 KB | 9c1f43d90c6e5c82a8608f4bd82f61ec |
| statistics/ |