TF_ChIP-seq_ENCSR972CVS
TF_ChIP-seq ENCSR972CVS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELK3" and target="ELK3"]
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| Id: | TF_ChIP-seq/ENCSR972CVS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR972CVS [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELK3" and target="ELK3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ELK3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN969YAS|/analyses/ENCAN969YAS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN969YAS|/analyses/ENCAN969YAS/} has in progress subobject document {ccf8ceff-e1bd-4698-8e6b-effe99684e36|/documents/ccf8ceff-e1bd-4698-8e6b-effe99684e36/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF820OZZ|/files/ENCFF820OZZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF820OZZ|/files/ENCFF820OZZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.57. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF745ZHC|/files/ENCFF745ZHC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF745ZHC|/files/ENCFF745ZHC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR972CVS | float |
TF_ChIP-seq_ENCSR972CVS |
TF_ChIP-seq ENCSR972CVS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELK3" and target="ELK3"]
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[15.6, 749] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF198NGY.bed.gz | 29.09 KB | 91e2d481c44a3f933119331eb7f5f9ea |
| ENCFF198NGY.bed.gz.dvc | 99.0 B | f7c0fe29807cd5b5d944ad05c2e2b203 |
| ENCFF198NGY.tabix.bed.gz | 18.67 KB | ccb6a78cef4bb9ade96ee9806720c468 |
| ENCFF198NGY.tabix.bed.gz.dvc | 105.0 B | 42ede191eb3657360d89485820d96ca1 |
| ENCFF198NGY.tabix.bed.gz.tbi | 17.62 KB | b51f64e79998d3b4a00f100afab836a8 |
| ENCFF198NGY.tabix.bed.gz.tbi.dvc | 109.0 B | 6c956038f241301f5ef36f0a3f284e87 |
| genomic_resource.yaml | 4.43 KB | e396b4170d834846f33401e6ed7d296b |
| genomic_resource_original.yaml | 4.27 KB | 089503bc7deb228313129a09462fbcb2 |
| statistics/ |