TF_ChIP-seq_ENCSR971EWR
TF_ChIP-seq ENCSR971EWR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5" and target="ETV5"]
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| Id: | TF_ChIP-seq/ENCSR971EWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR971EWR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5" and target="ETV5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN861GSM|/analyses/ENCAN861GSM/} has in progress subobject document {858b8b5e-7148-4d07-b87d-58967fee0010|/documents/858b8b5e-7148-4d07-b87d-58967fee0010/} audit_internal_action: Released analysis {ENCAN861GSM|/analyses/ENCAN861GSM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF034EJK|/files/ENCFF034EJK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17048251 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ETV5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF034EJK|/files/ENCFF034EJK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF034EJK|/files/ENCFF034EJK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF313PYN|/files/ENCFF313PYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF313PYN|/files/ENCFF313PYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR971EWR | float |
TF_ChIP-seq_ENCSR971EWR |
TF_ChIP-seq ENCSR971EWR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5" and target="ETV5"]
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[10.8, 436] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF604LXR.bed.gz | 302.89 KB | 19235dc3d6e1d64ca5632a5da41fbd5e |
| ENCFF604LXR.bed.gz.dvc | 100.0 B | 1734a2c655161f2081fb1b6e24d3ac9c |
| ENCFF604LXR.tabix.bed.gz | 233.76 KB | 25fc9f791edf9ac90c81ee59159d0493 |
| ENCFF604LXR.tabix.bed.gz.dvc | 106.0 B | 048b171214c56962e27d69f9d8e7d243 |
| ENCFF604LXR.tabix.bed.gz.tbi | 101.65 KB | 2507effc03ee477df578d07897aaa979 |
| ENCFF604LXR.tabix.bed.gz.tbi.dvc | 110.0 B | 3999d64caf8bfbe4ea8bbae9d285b341 |
| genomic_resource.yaml | 4.92 KB | 13afbd901bfa6ec35b36dcef50fe2a47 |
| genomic_resource_original.yaml | 4.75 KB | ff6f1b22ad373f1d5336bb9ac827520f |
| statistics/ |